Search for: All records

Identifying clades with extensive and conspicuous changes in diploid chromosome number (2n) is an important step in unraveling the evolutionary mechanisms underlying karyotype evolution. Here, we report low 2n in a monophyletic group of teleost fishes within the family Osphronemidae defined by their unique spiral egg structure (the “spiral egg” clade). We sampled seven of the nine known species within the spiral egg clade, reporting novel 2n for five species and confirming two others. We find high variability in both 2n and chromosome arm number (fundamental number, FN), suggesting a 2n reduction during the emergence of the clade and numerous large-scale mutations across evolutionary time. These data provide important information in cataloguing 2n shifts in teleost fishes and highlight this group for further study in chromosomal and genomic evolution due to their karyotypic heterogeneity. 

Abstract Identifying clades with numerous and noticeable changes in chromosome counts is an important step in unraveling the evolutionary mechanisms that shape cytogenetic processes. Here, we describe low chromosome counts in a group of teleost fishes delimited by their unique spiral egg structure and with a species with a known low chromosome count within the labyrinthine clade (Osphronemidae). We sampled seven of nine known species within this spiral egg clade, reporting novel chromosome counts for five species and confirming two others. Overall, we find high variability in both chromosome count and arm number, which suggests a rapid loss of chromosomes during the emergence of the clade and numerous large-scale mutations occurring across evolutionary time. Lastly, we offer some possible explanations for these changes based on current and ongoing empirical and theoretical research. These data provide important information in cataloguing rapid chromosomal shifts in teleost fishes and highlights this group for further study in chromosomal and genomic evolution due to their karyotypic heterogeneity. 

Sex chromosome dosage compensation is a model to understand the coordinated evolution of transcription; however, the advanced age of the sex chromosomes in model systems makes it difficult to study how the complex regulatory mechanisms underlying chromosome-wide dosage compensation can evolve. The sex chromosomes ofPoecilia pictahave undergone recent and rapid divergence, resulting in widespread gene loss on the male Y, coupled with complete X Chromosome dosage compensation, the first case reported in a fish. The recent de novo origin of dosage compensation presents a unique opportunity to understand the genetic and evolutionary basis of coordinated chromosomal gene regulation. By combining a new chromosome-level assembly ofP. pictawith whole-genome bisulfite sequencing and RNA-seq data, we determine that the YY1 transcription factor (YY1) DNA binding motif is associated with male-specific hypomethylated regions on the X, but not the autosomes. These YY1 motifs are the result of a recent and rapid repetitive element expansion on theP. pictaX Chromosome, which is absent in closely related species that lack dosage compensation. Taken together, our results present compelling support that a disruptive wave of repetitive element insertions carrying YY1 motifs resulted in the remodeling of the X Chromosome epigenomic landscape and the rapid de novo origin of a dosage compensation system.